Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs10849984 | chr12:112347728 | T/C | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs10849985 | chr12:112347754 | C/T | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs10897639 | chr11:70847181 | T/C | 0.000201 | 189 | 13.73 | 3.68 | 0 | KM Plot |
| LIHC | rs10897640 | chr11:70847296 | G/C | 0.000201 | 189 | 13.73 | 3.68 | 0 | KM Plot |
| LIHC | rs10897641 | chr11:70847384 | G/T | 0.000201 | 189 | 13.73 | 3.68 | 0 | KM Plot |
| LIHC | rs10897642 | chr11:70847671 | C/T | 0.000186 | 190 | 13.8 | 3.68 | 0 | KM Plot |
| LIHC | rs10916607 | chr1:224571378 | T/G | 8.22E-5 | 192 | 2.63 | 13.83 | 13.58 | KM Plot |
| LIHC | rs10916614 | chr1:224602569 | A/C | 1.5E-6 | 190 | 2.4 | 13.85 | 13.55 | KM Plot |
| LIHC | rs10916617 | chr1:224637070 | C/T | 0.000489 | 192 | 13.35 | 13.87 | 2.17 | KM Plot |
| LIHC | rs10938366 | chr4:44810477 | C/T | 5.06E-5 | 189 | 14.8 | 13.83 | 4.43 | KM Plot |
| LIHC | rs10938369 | chr4:44860189 | A/G | 0.000145 | 192 | 14.03 | 13.35 | 9.43 | KM Plot |
| LIHC | rs10949953 | chr7:64423960 | A/C | 3.53E-7 | 192 | 2.9 | 5.22 | 13.97 | KM Plot |
| LIHC | rs10971392 | chr9:33083908 | C/T | 2.34E-5 | 192 | 13.6 | 15.07 | 12.53 | KM Plot |
| LIHC | rs10975580 | chr9:6414839 | A/G | 1.88E-6 | 192 | 13.58 | 15.07 | 3.23 | KM Plot |
| LIHC | rs11044648 | chr12:19683418 | C/T | 1.1E-7 | 192 | 1.03 | 5.1 | 13.6 | KM Plot |